STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

@article{Klingbeil2011STOCHSIMGPUPS,
  title={STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB},
  author={Guido Klingbeil and Radek Erban and Michael B. Giles and Philip K. Maini},
  journal={Bioinformatics},
  year={2011},
  volume={27 8},
  pages={1170-1}
}
MOTIVATION The importance of stochasticity in biological systems is becoming increasingly recognized and the computational cost of biologically realistic stochastic simulations urgently requires development of efficient software. We present a new software tool STOCHSIMGPU that exploits graphics processing units (GPUs) for parallel stochastic simulations of biological/chemical reaction systems and show that significant gains in efficiency can be made. It is integrated into MATLAB and works with… CONTINUE READING
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