SSO1450 – A CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA

@article{Han2009SSO1450A,
  title={SSO1450 – A CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA},
  author={Dong Han and Kathleen C. Lehmann and G. Krauss},
  journal={FEBS Letters},
  year={2009},
  volume={583}
}
CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus
TLDR
Recent progress made in understanding spacer recruitment from foreign DNA, production of small RNAs, in vitro activity of CRISPR-associated protein complexes and attack of viruses and plasmids in in vivo test systems are addressed.
Characterisation of proteins involved in CRISPR-mediated antiviral defence in Sulfolobus solfataricus
TLDR
The biochemical characteristics of CRISPR-mediated defense in the crenarchaeon Sulfolobus solfataricus is described, and the recognition and silencing of DNA targets in E. coli has been shown to involve a multiprotein complex termed CASCADE as well as Cas3, a putative helicase-HD nuclease.
Characterization of the CRISPR/Cas Subtype I-A System of the Hyperthermophilic Crenarchaeon Thermoproteus tenax
TLDR
Seven CRISPR loci in the genome of the crenarchaeon Thermoproteus tenax that include spacers with significant similarity not only to archaeal viruses but also to T. tenax genes are investigated to provide insights into the specialized mechanisms of an archaealing CRISpr/Cas system and allow selective functional analyses of Cas protein complexes in the future.
CRISPR/Cas system and its role in phage-bacteria interactions.
TLDR
Recent progress made in the CRISPR/Cas system is described, which participates in a constant evolutionary battle between phages and bacteria through addition or deletion of spacers in host cells and mutations or deletion in phage genomes.
Characterisation of the CRISPR/Cas system of the hyperthermophilic Archaeum Thermoproteus tenax
TLDR
The function of the archaeal CRISPR/Cas system is studied in more detail using the hyperthermophilic organism Thermoproteus tenax as an example and sevenCRISPR loci could be identified in the genome of T. tenax.
In vivo activity of CRISPR‐mediated virus defence in a hyperthermophilic archaeon
TLDR
In vivo activity of CRISPR/Cas in archaea for the first time is demonstrated and it is suggested that – unlike the recently demonstrated in vitro cleavage of RNA in Pyrococcus– DNA is targeted in this archaeon.
Double-stranded Endonuclease Activity in Bacillus halodurans Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated Cas2 Protein*
TLDR
This work shows that the Bacillus halodurans Cas2 (Bha_Cas2) from the subtype I-C/Dvulg CRISPR instead possesses metal-dependent endonuclease activity against double-stranded (ds)DNA, and proposes that the distinct substrate preferences among Cas2 proteins may be determined by the sequence and structure in the β1–α1 loop.
The CRISPR-Associated Gene cas2 of Legionella pneumophila Is Required for Intracellular Infection of Amoebae
TLDR
Analysis of the Legionella pneumophila strain 130b chromosome detected a subtype II-B CRISPR-Cas locus that contains cas9, cas1, cas2, cas4, and an array with 60 repeats and 58 unique spacers that indicates that cas2 has a role in the transmission of Legionnaires' disease.
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
TLDR
Evidence is presented that large subunits contained in most of the CRISPR-Cas systems could be homologous to Cas10 proteins which contain a polymerase-like Palm domain and are predicted to be enzymatically active in Type III CRISpr-cas systems but inactivated in Type I systems.
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References

SHOWING 1-10 OF 26 REFERENCES
Characterization of the endonuclease SSO2001 from Sulfolobus solfataricus P2
The Repetitive DNA Elements Called CRISPRs and Their Associated Genes: Evidence of Horizontal Transfer Among Prokaryotes
TLDR
A mechanism by which this HGT has occurred is suggested, namely, that the CRISPR loci can be carried between cells on megaplasmids ≥40 kb in length.
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes.
TLDR
This work has identified Pyrococcus furiosus Cas6 as a novel endoribonuclease that cleaves CRISPR RNAs within the repeat sequences to release individual invader targeting RNAs.
A Novel Family of Sequence-specific Endoribonucleases Associated with the Clustered Regularly Interspaced Short Palindromic Repeats*
TLDR
CAS2 proteins are sequence-specific endoribonucleases, and it is proposed that their role in the CRISPR-mediated anti-phage defense might involve degradation of phage or cellular mRNAs.
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
TLDR
It appears most likely that CASS is a prokaryotic system of defense against phages and plasmids that functions via the RNAi mechanism, which seems to involve integration of fragments of foreign genes into archaeal and bacterial chromosomes yielding heritable immunity to the respective agents.
A putative viral defence mechanism in archaeal cells.
TLDR
Analysis of all the current data on archaeal repeat clusters provides some new insights into their diverse structures, transcriptional properties and mode of structural development.
CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
TLDR
The structure and function of this newly recognized antiviral mechanism, together with a group of associated proteins, confer resistance to phages, possibly by an RNA-interference-like mechanism.
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
TLDR
It is found that, after viral challenge, bacteria integrated new spacers derived from phage genomic sequences, and CRISPR provided resistance against phages, and resistance specificity is determined by spacer-phage sequence similarity.
A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes
TLDR
It is evident from this analysis that CRISPR/cas loci are larger, more complex, and more heterogeneous than previously appreciated.
Identification of genes that are associated with DNA repeats in prokaryotes
TLDR
A novel family of repetitive DNA sequences that is present among both domains of the prokaryotes but absent from eukaryotes or viruses is studied, characterized by direct repeats, varying in size from 21 to 37 bp, interspaced by similarly sized non‐repetitive sequences.
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