SEQAID: a DNA sequence assembling program based on a mathematical model

  title={SEQAID: a DNA sequence assembling program based on a mathematical model},
  author={Hannu Peltola and Hans S{\"o}derlund and Esko Ukkonen},
  journal={Nucleic acids research},
  volume={12 1 Pt 1},
A program package, called SEQAID, to support DNA sequencing is presented. The program automatically assembles long DNA sequences from short fragments with minimal user interaction. Various tools for controlling the assembling process are also available. The main novel features of the system are that SEQAID implements several new well-behaved algorithms based on a mathematical model of the problem. It also utilizes available information on restriction fragments to detect illegitimate overlaps… CONTINUE READING
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