SDA 7: A modular and parallel implementation of the simulation of diffusional association software

@article{Martinez2015SDA7A,
  title={SDA 7: A modular and parallel implementation of the simulation of diffusional association software},
  author={Michael Martinez and Neil J. Bruce and Julia Romanowska and Daria B. Kokh and Musa Ozboyaci and Xiaofeng Yu and Mehmet Ali {\"O}zt{\"u}rk and Stefan Richter and Rebecca C. Wade},
  journal={Journal of computational chemistry},
  year={2015},
  volume={36 21},
  pages={
          1631-45
        }
}
The simulation of diffusional association (SDA) Brownian dynamics software package has been widely used in the study of biomacromolecular association. Initially developed to calculate bimolecular protein-protein association rate constants, it has since been extended to study electron transfer rates, to predict the structures of biomacromolecular complexes, to investigate the adsorption of proteins to inorganic surfaces, and to simulate the dynamics of large systems containing many… CONTINUE READING
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