Rule-based modeling of biochemical networks

@article{Faeder2005RulebasedMO,
  title={Rule-based modeling of biochemical networks},
  author={James R. Faeder and Michael L. Blinov and Byron Goldstein and William S. Hlavacek},
  journal={Complex.},
  year={2005},
  volume={10},
  pages={22-41}
}
A method for the automatic generation of mathematical/computational models that account comprehensively and precisely for the full spectrum of chemical species implied by user-specified activities, potential modifications and interactions of the molecular components of biomolecules is described. A computer-implemented system that includes software was used to generate models. The software has a user interface that allows a user to generate new models and modify existing models. 

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