# Restricted DCJ-Indel Model Revisited

@inproceedings{Braga2013RestrictedDM, title={Restricted DCJ-Indel Model Revisited}, author={Mar{\'i}lia Dias Vieira Braga and Jens Stoye}, booktitle={BSB}, year={2013} }

The Double Cut and Join (DCJ) is a generic operation representing many rearrangements that can change the organization of a genome, but not its content. For comparing two genomes with unequal contents, in addition to DCJ operations, we have to allow insertions and deletions of DNA segments. The distance in the so-called general DCJ-indel model can be exactly computed, but allows circular chromosomes to be created at intermediate steps, even if the compared genomes are linear. In this case it is…

## 3 Citations

### Sorting Linear Genomes with Rearrangements and Indels

- BiologyIEEE/ACM Transactions on Computational Biology and Bioinformatics
- 2015

A very simple proof is presented showing that the distance, which can be computed in linear time, is the same for both the unrestricted and the restricted DCJ-indel models.

### Rearrangement Problems with Duplicated Genomic Markers

- BiologyArXiv
- 2014

This work aims at designing means to evaluate relative evolutionary distances between species, or to infer common ancestor genomes to a group of species, in the particular case where genomes present multiple occurrencies of genes, which makes things more complex.

### On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model

- Physics
- 2018

In der vergleichenden Genomik werden zwei oder mehrere Genome hinsichtlich ihres Verwandtschaftsgrades verglichen. Das Ziel dieser Arbeit ist die Erforschung von mathematischen Modellen, die zum…

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