Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX

@article{Strmbck2005RepresentationsOM,
  title={Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX},
  author={Lena Str{\"o}mb{\"a}ck and Patrick Lambrix},
  journal={Bioinformatics},
  year={2005},
  volume={21 24},
  pages={4401-7}
}
MOTIVATION Analysis and simulation of pathway data is of high importance in bioinformatics. Standards for representation of information about pathways are necessary for integration and analysis of data from various sources. Recently, a number of representation formats for pathway data, SBML, PSI MI and BioPAX, have been proposed. RESULTS In this paper we compare these formats and evaluate them with respect to their underlying models, information content and possibilities for easy creation of… CONTINUE READING
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