RefProtDom: a protein database with improved domain boundaries and homology relationships

Abstract

UNLABELLED RefProtDom provides a set of divergent query domains, originally selected from Pfam, and full-length proteins containing their homologous domains, with diverse architectures, for evaluating pair-wise and iterative sequence similarity searches. Pfam homology and domain boundary annotations in the target library were supplemented using local and semi-global searches, PSI-BLAST searches, and SCOP and CATH classifications. AVAILABILITY RefProtDom is available from http://faculty.virginia.edu/wrpearson/fasta/PUBS/gonzalez09a.

DOI: 10.1093/bioinformatics/btq426

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Cite this paper

@inproceedings{Gonzalez2010RefProtDomAP, title={RefProtDom: a protein database with improved domain boundaries and homology relationships}, author={Mileidy W. Gonzalez and William R. Pearson}, booktitle={Bioinformatics}, year={2010} }