Reconstructing the History of Syntenies Through Super-Reconciliation

@inproceedings{Delabre2018ReconstructingTH,
  title={Reconstructing the History of Syntenies Through Super-Reconciliation},
  author={Matt{\'e}o Delabre and Nadia El-Mabrouk and Katharina T. Huber and Manuel Lafond and Vincent Moulton and Emmanuel Noutahi and Miguel Sautie Castellanos},
  booktitle={RECOMB-CG},
  year={2018}
}
Classical gene and species tree reconciliation, used to infer the history of gene gain and loss explaining the evolution of gene families, assumes an independent evolution for each family. While this assumption is reasonable for genes that are far apart in the genome, it is clearly not suited for genes grouped in syntenic blocks, which are more plausibly the result of a concerted evolution. Here, we introduce the Super-Reconciliation model, that extends the traditional Duplication-Loss model to… 
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