RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming

  title={RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming},
  author={Yuki Kato and Kengo Sato and Michiaki Hamada and Yoshihide Watanabe and Kiyoshi Asai and Tatsuya Akutsu},
MOTIVATION Considerable attention has been focused on predicting RNA-RNA interaction since it is a key to identifying possible targets of non-coding small RNAs that regulate gene expression post-transcriptionally. A number of computational studies have so far been devoted to predicting joint secondary structures or binding sites under a specific class of interactions. In general, there is a trade-off between range of interaction type and efficiency of a prediction algorithm, and thus efficient… CONTINUE READING
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