RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

  title={RNABindR: a server for analyzing and predicting RNA-binding sites in proteins},
  author={Michael Terribilini and Jeffry D. Sander and Jae-Hyung Lee and Peter Zaback and Robert L. Jernigan and Vasant Honavar and Drena Dobbs},
  booktitle={Nucleic Acids Research},
Understanding interactions between proteins and RNA is key to deciphering the mechanisms of many important biological processes. Here we describe RNABindR, a web-based server that identifies and displays RNA-binding residues in known protein-RNA complexes and predicts RNA-binding residues in proteins of unknown structure. RNABindR uses a distance cutoff to identify which amino acids contact RNA in solved complex structures (from the Protein Data Bank) and provides a labeled amino acid sequence… CONTINUE READING
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