RAxML-Light: a tool for computing terabyte phylogenies

@inproceedings{Stamatakis2012RAxMLLightAT,
  title={RAxML-Light: a tool for computing terabyte phylogenies},
  author={Alexandros Stamatakis and Andre J. Aberer and Christian Goll and Stephen A. Smith and Simon A. Berger and Fernando Izquierdo-Carrasco},
  booktitle={Bioinformatics},
  year={2012}
}
MOTIVATION Due to advances in molecular sequencing and the increasingly rapid collection of molecular data, the field of phyloinformatics is transforming into a computational science. Therefore, new tools are required that can be deployed in supercomputing environments and that scale to hundreds or thousands of cores. RESULTS We describe RAxML-Light, a tool for large-scale phylogenetic inference on supercomputers under maximum likelihood. It implements a light-weight checkpointing mechanism… CONTINUE READING
Related Discussions
This paper has been referenced on Twitter 8 times. VIEW TWEETS

Citations

Publications citing this paper.
Showing 1-10 of 56 extracted citations

References

Publications referenced by this paper.
Showing 1-10 of 12 references

Phylogenetic search algorithms for maxi um likelihood

A. Stamatakis, M. Ott
Algorithms in Computational Molecular Biology • 2011

Phylogenetic search algorithms for maximum likelihood

M. Elloumi, Albert Y. Zomaya
Algorithms in Computational Molecular Biology : Techniques , Approaches and Applications • 2011

RogueNaRo k: an Efficient and Exact Algorithm for Rogue Taxon Identification

F. Studies. Izquierdo-Carrasco, S. Smith, A. Stamatakis
Technical R eport Exelixis-RRDR- • 2011

Load Balance in the Phylogenetic Likelihood Kernel

2009 International Conference on Parallel Processing • 2009

Phylogenetic models of rate heterogeneity: a high performance computing perspective

Proceedings 20th IEEE International Parallel & Distributed Processing Symposium • 2006
View 1 Excerpt

Similar Papers

Loading similar papers…