QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

@article{Tang2005QualitySNPAP,
  title={QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species},
  author={Jifeng Tang and Ben Vosman and Roeland E. Voorrips and C. Gerard van der Linden and Jack A. M. Leunissen},
  journal={BMC Bioinformatics},
  year={2005},
  volume={7},
  pages={438 - 438}
}
BackgroundSingle nucleotide polymorphisms (SNPs) are important tools in studying complex genetic traits and genome evolution. Computational strategies for SNP discovery make use of the large number of sequences present in public databases (in most cases as expressed sequence tags (ESTs)) and are considered to be faster and more cost-effective than experimental procedures. A major challenge in computational SNP discovery is distinguishing allelic variation from sequence variation between… CONTINUE READING

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References

Publications referenced by this paper.
SHOWING 1-10 OF 40 REFERENCES

CAP3: A DNA sequence assembly program.

  • Genome research
  • 1999
VIEW 6 EXCERPTS
HIGHLY INFLUENTIAL

Automated SNP Detection in Expressed Sequence Tags: Statistical Considerations and Application to Maritime Pine Sequences

Loïck Le Dantec, David Chagné, +10 authors Christophe Plomion
  • Plant Molecular Biology
  • 2004
VIEW 5 EXCERPTS
HIGHLY INFLUENTIAL

Applications of single nucleotide polymorphisms in crop genetics.

  • Current opinion in plant biology
  • 2002
VIEW 3 EXCERPTS
HIGHLY INFLUENTIAL

High-throughput identification, database storage and analysis of SNPs in EST sequences.

  • Genome informatics. International Conference on Genome Informatics
  • 2001
VIEW 4 EXCERPTS
HIGHLY INFLUENTIAL

The essence of SNPs

AJ Brookes
  • Gene
  • 1999
VIEW 3 EXCERPTS
HIGHLY INFLUENTIAL

A method for finding single - nucleotide polymorphisms with allele frequencies in sequences of deep cover

Wang JHX
  • BMC Bioinformatics
  • 2005

A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage

JHX Wang
  • BMC Bioinformatics
  • 2005
VIEW 3 EXCERPTS