Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells
@article{Tan2008ProteomicAO, title={Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells}, author={Feng-wei Tan and Lifang Lu and Yun Cai and Jing-lan Wang and Yunfei Xie and Lin Wang and Yan-hua Gong and Bing-e Xu and Jun Wu and Ying Luo and Boqin Qiang and Jiangang Yuan and Xiao-qiong Sun and Xiaozhong Peng}, journal={PROTEOMICS}, year={2008}, volume={8} }
Post‐translational modification by ubiquitin (Ub) and Ub‐like modifiers is one of the most important mechanisms regulating a wide range of cellular processes in eukaryotes. Through mediating 26S proteasome‐dependent degradation of substrates, the covalent modification of proteins by multiple Ub (ubiquitination) can regulate many different cellular functions such as transcription, antigen processing, signal transduction and cell cycle. To better understand ubiquitination and its functions…
35 Citations
Proteomic identification of protein ubiquitination events
- BiologyBiotechnology & genetic engineering reviews
- 2013
Mass-spectrometry-based methods for the identification of protein ubiquitination sites are discussed, their advantages and disadvantages are analyzed, and their application for proteomic analysis of ubiquitinated proteins is discussed.
Identification of ubiquitinated proteins from human multiple myeloma U266 cells by proteomics.
- BiologyBiomedical and environmental sciences : BES
- 2011
OBJECTIVE
To identify ubiquitinated proteins from complex human multiple myeloma (MM) U266 cells, a malignant disorder of differentiated human B cells.
METHODS
Employing a globally proteomic…
Uncovering Ubiquitin and Ubiquitin-like Signaling Networks
- BiologyChemical reviews
- 2011
This review is focused on uncovering signaling networks for ubiquitin and Ubiquitin-like proteins by mass spectrometry and highlights the site-specific studies published in 2010 and 2011.
mUbiSiDa: A Comprehensive Database for Protein Ubiquitination Sites in Mammals
- BiologyPloS one
- 2014
The mUbiSiDa was designed to be a widely used tool for biologists and biomedical researchers with a user-friendly interface, and facilitate the further research of protein ubiquitination, biological networks and functional proteomics.
Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
- Biology, ChemistryJournal of proteome research
- 2012
A method based on K0-Ub is a powerful tool for proteome-wide identification of ubiquitylation sites of target proteins with the use of an engineered form of ubiquitin, in which all seven lysine residues are replaced with arginine.
Quantitative Proteomic Analysis of Cellular Protein Modulation upon Inhibition of the NEDD8-Activating Enzyme by MLN4924
- Biology, ChemistryMolecular & Cellular Proteomics
- 2011
The combination of RNAi with stable isotope labeling with amino acids in cell culture provides a paradigm for understanding the mechanism of action of novel agents affecting the ubiquitin proteasome system and a path to identifying mechanistic biomarkers.
Proteomic approaches for the profiling of ubiquitylation events and their applications in drug discovery.
- BiologyJournal of proteomics
- 2020
Quantitative Proteomic Analysis of Cellular Protein Modulation upon Inhibition of the NEDD8-Activating Enzyme by MLN4924□S
- Biology, Chemistry
- 2011
The combination of RNAi with stable isotope labeling with amino acids in cell culture provides a paradigm for understanding the mechanism of action of novel agents affecting the ubiquitin proteasome system and a path to identifying mechanistic biomarkers.
Recent advances in defining the ubiquitylome
- Biology, ChemistryExpert review of proteomics
- 2014
Two central ideas have developed to characterize the ubiquitylome: affinity purification of ubiquitylated proteins and optimization of GG-peptide enrichment, which will discuss recent advances in both approaches and discuss how these studies are essential to pharmacoproteomics.
Characterization of the protein ubiquitination response induced by Doxorubicin
- BiologyThe FEBS journal
- 2012
Proteomic analysis of ubiquitinated proteins shows that nanomolar Doxorubicin treatment of neuroblastoma cells caused dose‐dependent over‐ubiquitination of a specific set of proteins in the absence of measurable inhibition of proteasome, and these data strongly reinforce the hypothesis that Doxorbicin may also exert its effect by damaging proteins.
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