Protein modeling and structure prediction with a reduced representation.

  title={Protein modeling and structure prediction with a reduced representation.},
  author={Andrzej Kolinski},
  journal={Acta biochimica Polonica},
  volume={51 2},
Protein modeling could be done on various levels of structural details, from simplified lattice or continuous representations, through high resolution reduced models, employing the united atom representation, to all-atom models of the molecular mechanics. Here I describe a new high resolution reduced model, its force field and applications in the structural proteomics. The model uses a lattice representation with 800 possible orientations of the virtual alpha carbon-alpha carbon bonds. The… CONTINUE READING

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