Protein Threading by Linear Programming

@article{Xu2003ProteinTB,
  title={Protein Threading by Linear Programming},
  author={Jinbo Xu and Ming Li and Guohui Lin and Dongsup Kim and Ying Xu},
  journal={Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing},
  year={2003},
  pages={264-75}
}
Protein three-dimensional structure prediction through threading approach has been extensively studied and various models and algorithms have been proposed. In order to further explore ways to improve accuracy and efficiency of the threading process, this paper investigates the effectiveness of a new method: protein threading via linear programming. Based on the contact map model of protein 3D structure, we formulate the protein threading problem as a large scale integer programming problem… CONTINUE READING
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