Progressive Alignment Method Using Genetic Algorithm for Multiple Sequence Alignment

@article{Naznin2012ProgressiveAM,
  title={Progressive Alignment Method Using Genetic Algorithm for Multiple Sequence Alignment},
  author={Farhana Naznin and Ruhul A. Sarker and Daryl Essam},
  journal={IEEE Transactions on Evolutionary Computation},
  year={2012},
  volume={16},
  pages={615-631}
}
In this paper, we have proposed a progressive alignment method using a genetic algorithm for multiple sequence alignment, named GAPAM. We have introduced two new mechanisms to generate an initial population: the first mechanism is to generate guide trees with randomly selected sequences and the second is shuffling the sequences inside such trees. Two different genetic operators have been implemented with GAPAM. To test the performance of our algorithm, we have compared it with existing well… CONTINUE READING
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