Prediction of structures of multidomain proteins from structures of the individual domains.
@article{Wollacott2006PredictionOS, title={Prediction of structures of multidomain proteins from structures of the individual domains.}, author={Andrew M Wollacott and Alexandre Zanghellini and Paul L. Murphy and David Baker}, journal={Protein science : a publication of the Protein Society}, year={2006}, volume={16 2}, pages={ 165-75 } }
We describe the development of a method for assembling structures of multidomain proteins from structures of isolated domains. The method consists of an initial low-resolution search in which the conformational space of the domain linker is explored using the Rosetta de novo structure prediction method, followed by a high-resolution search in which all atoms are treated explicitly and backbone and side chain degrees of freedom are simultaneously optimized. The method recapitulates, often with… CONTINUE READING
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