Prediction of protein secondary structure using the 3D-1D compatibility algorithm

@article{Ito1997PredictionOP,
  title={Prediction of protein secondary structure using the 3D-1D compatibility algorithm},
  author={M. Ito and Y. Matsuo and Ken Nishikawa},
  journal={Computer applications in the biosciences : CABIOS},
  year={1997},
  volume={13 4},
  pages={415-24}
}
A new method for the prediction of protein secondary structure is proposed, which relies totally on the global aspect of a protein. The prediction scheme is as follows. A structural library is first scanned with a query sequence by the 3D-1D compatibility method developed before. All the structures examined are sorted with the compatibility score and the top 50 in the list are picked out. Then, all the known secondary structures of the 50 proteins are globally aligned against the query sequence… CONTINUE READING
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