Prebiotic Amino Acid Thioester Synthesis: Thiol-Dependent Amino Acid Synthesis from Formose Substrates (Formaldehyde and Glycolaldehyde) and Ammonia

@article{Weber2004PrebioticAA,
  title={Prebiotic Amino Acid Thioester Synthesis: Thiol-Dependent Amino Acid Synthesis from Formose Substrates (Formaldehyde and Glycolaldehyde) and Ammonia},
  author={Arthur L. Weber},
  journal={Origins of life and evolution of the biosphere},
  year={2004},
  volume={28},
  pages={259-270}
}
  • A. Weber
  • Published 2004
  • Chemistry, Biology
  • Origins of life and evolution of the biosphere
Formaldehyde and glycolaldehyde (substrates of the formose autocatalytic cycle) were shown to react with ammonia yielding alanine and homoserine under mild aqueous conditions in the presence of thiol catalysts. Since similar reactions carried out without ammonia yielded α-hydroxy acid thioesters (Weber, 1984a, b), the thiol-dependent synthesis of alanine and homoserine is presumed to occur via amino acid thioesters – intermediates capable of forming peptides (Weber and Orgel 1979). A pH 5.2… 

The Sugar Model: Catalysis by Amines and Amino Acid Products

  • A. Weber
  • Chemistry
    Origins of life and evolution of the biosphere
  • 2004
The demonstration that the alanine catalyzes the conversion of glycolaldehyde and formaldehyde to pyruvaldehyde indicates that this synthetic pathway is capable ofautocatalysis, and the relevance of this synthetic process, named the Sugar Model, to the origin of life is discussed.

Sugar-Driven Prebiotic Synthesis of 3,5(6)-Dimethylpyrazin-2-one: A Possible Nucleobase of a Primitive Replication Process

  • A. Weber
  • Chemistry, Biology
    Origins of Life and Evolution of Biospheres
  • 2008
This synthetic process is considered a reasonable model of origin-of-life chemistry because it uses plausible prebiotic substrates, and resembles modern biosynthesis by employing the energized carbon groups of sugars to drive the synthesis of small organic molecules.

Sugar-Driven Prebiotic Synthesis of Ammonia from Nitrite

  • A. Weber
  • Chemistry
    Origins of Life and Evolution of Biospheres
  • 2010
The ability of sugars to drive the synthesis of ammonia is considered important to abiogenesis because it provides a way to generate photochemically unstable ammonia at sites of sugar-based origin-of-life processes from nitrite, a plausible prebiotic nitrogen species.

Peptide ligation by chemoselective aminonitrile coupling in water

Prebiotic peptide formation is achieved through chemoselective, high-yielding ligation of α-aminonitriles in water, showing selectivity for α-peptide coupling and tolerance of all proteinogenic amino acid residues.

Peptide ligation by chemoselective aminonitrile coupling in water

A chemoselective, high-yielding α-aminonitrile ligation that exploits only prebiotically plausible molecules—hydrogen sulfide, thioacetate 12,14 and ferricyanide12,14–17 or cyanoacetylene8,14—to yield α-peptides in water is reported, suggesting that short N-acyl peptide nitriles were plausible substrates during early evolution.

The prebiotic geochemistry of formaldehyde

Dual Role of Hydrophobic Racemic Thioesters of α-Amino Acids in the Generation of Isotactic Peptides and Co-peptides in Water; Implications for the Origin of Homochirality

Isotactic co-peptides containing Leu and Val residues were formed in the polymerization of mixtures of activatedDL(d8)-Val with DL(d3)-LeuSEt in water, implying that the racemic β-sheets exert regio-enantio-selection but not chemo-selection.

The Sugar Model: Catalytic Flow Reactor Dynamics of Pyruvaldehyde Synthesis from Triose Catalyzed by Poly-L-Lysine Contained in a Dialyzer

  • A. Weber
  • Chemistry, Biology
    Origins of life and evolution of the biosphere
  • 2004
The dialyzer method of catalyst containment was selected because it provides a simple and easily manipulated experimental system for studying the dynamics and evolutionary development of confinedautocatalytic processes related to the origin of life underanaerobic conditions.

Thioesters provide a plausible prebiotic path to proto-peptides

The synthesis of thiodepsipeptides and HS-peptides under mild temperatures and various pH, suggesting they could have formed on early prebiotic Earth and were possible contributors to early chemical evolution.

On the Formation of Glycolaldehyde (HCOCH2OH) and Methyl Formate (HCOOCH3) in Interstellar Ice Analogs

Binary mixtures of methanol (CH3OH) and carbon monoxide (CO) ices were irradiated at 10 K with energetic electrons to mimic the energy transfer processes that occur in the track of the trajectories
...

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    Journal of Molecular Evolution
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A second energyrich thioester, N-acetyl-S-glyceroylcysteine, is also produced from glyceraldehyde when these reactions are carried out in the presence of oxygen and to a limited extent in the absence of oxygen.

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Alanine synthesis in the presence of thiol probably proceeds via alanyl thioester, which is produced by rearrangement of the imine of the hemithioacetal of pyruvaldehyde, a product of glyceraldehyde dehydration.

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