PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms

@inproceedings{Page2013PolyCatAR,
  title={PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms},
  author={Justin T. Page and Alan R. Gingle and Joshua A Udall},
  booktitle={G3},
  year={2013}
}
Read mapping is a fundamental part of next-generation genomic research but is complicated by genome duplication in many plants. Categorizing DNA sequence reads into their respective genomes enables current methods to analyze polyploid genomes as if they were diploid. We present PolyCat-a pipeline for mapping and categorizing all types of next-generation sequence data produced from allopolyploid organisms. PolyCat uses GSNAP's single-nucleotide polymorphism (SNP)-tolerant mapping to minimize the… CONTINUE READING
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