PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains

@article{Aleksiev2009PiSQRDAW,
  title={PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains},
  author={Tyanko Aleksiev and Raffaello Potestio and F. Pontiggia and Stefano Cozzini and Cristian Micheletti},
  journal={Bioinformatics},
  year={2009},
  volume={25 20},
  pages={
          2743-4
        }
}
SUMMARY The PiSQRD web resource can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately rigid units in the course of protein equilibrium fluctuations. The PiSQRD server takes as input a biomolecular structure and the desired fraction of protein internal fluctuations that must be accounted for by the relative rigid-body motion of the dynamical domains. Next, the lowest energy modes of fluctuation of the protein… Expand
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