Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia.

@article{Deng2018PhylogenyAB,
  title={Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): Insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia.},
  author={Min Deng and Xiao-Long Jiang and Andrew L. Hipp and Paul S Manos and Marlene Hahn},
  journal={Molecular phylogenetics and evolution},
  year={2018},
  volume={119},
  pages={
          170-181
        }
}
The evolutionary history of Quercus section Cyclobalanopsis, a dominant lineage in East Asian evergreen broadleaved forests (EBLFs), has not been comprehensively studied using molecular tools. In this study, we reconstruct the first comprehensive phylogeny of this lineage using a genomic approach (restriction-site associated DNA sequencing, RAD-seq), sampling 35 of the ca. 90 species currently recognized, representing all main morphological groups of section Cyclobalanopsis. In addition, 10… Expand
Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests.
TLDR
It is suggested that western North America is a source of biodiversity of East Asian subtropical EBLFs, which began to rise in the early Miocene and further diversified in the late Miocene, driven by the intensifying East Asian summer monsoon during these two periods. Expand
A dated phylogeny of Lardizabalaceae reveals an unusual long‐distance dispersal across the Pacific Ocean and the rapid rise of East Asian subtropical evergreen broadleaved forests in the late Miocene
Temperate South American–Asian disjunct distributions are the most unusual in organisms, and challenging to explain. Here, we address the origin of this unusual disjunction in Lardizabalaceae usingExpand
East Asian origins of European holly oaks (Quercus section Ilex Loudon) via the Tibet‐Himalaya
AIM: Many subtropical organisms exhibit an East Asian‐Tethyan disjunction, a distribution split between East Asia and the Mediterranean. The underlying mechanisms and timing have remained unclear toExpand
Phylogenetic relationships and biogeographic history of the unique Saxifraga sect. Irregulares (Saxifragaceae) from eastern Asia
Saxifraga L. is the largest genus in Saxifragaceae and a characteristic component of the herbaceous flora of the temperate and alpine mountains in the Northern Hemisphere. Section Irregulares is aExpand
Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation
TLDR
A first comprehensive taxonomic and phylogeographic scheme of western Eurasian members of sect. Expand
The Application and Limitation of Universal Chloroplast Markers in Discriminating East Asian Evergreen Oaks
TLDR
Test whether the four chloroplast markers atpI-atpH, matK, psbA-trnH, and ycf1, can discriminate the two evergreen oak sections in Asia – Cyclobalanopsis and Ilex and found that universal chloroblast DNA (cpDNA) barcoding markers could resolve two clades in Quercus. Expand
Oaks: an evolutionary success story.
TLDR
Four overarching explanations of evolutionary success in oaks are convergence on: accumulation of large reservoirs of diversity within populations and species; ability for rapid migration contributing to ecological priority effects on lineage diversification; high rates of evolutionary divergence within clades combined with convergent solutions to ecological problems across clades; propensity for hybridization, contributing to adaptive introgression and facilitating migration. Expand
Phylogenomics, biogeography, and evolution of the blue‐ or white‐fruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence following intercontinental geographic isolation
TLDR
It is suggested that the EA–ENA disjunct floras are an assembly of lineages descended from the Mesophytic Forests that evolved from the early Paleogene “boreotropical flora” through varied evolutionary pathways across lineages. Expand
Framework Phylogeny, Evolution and Complex Diversification of Chinese Oaks
TLDR
The authors' infrageneric phylogeny of Chinese oaks accords with the recently proposed classification of the genus Quercus, and points to tectonic activity and climatic change during the Tertiary as possible drivers of evolution and diversification in the Chinese oak's lineage. Expand
Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae).
TLDR
This study indicates that species diversification driven by both the intensification of the East Asian summer monsoon since the late Miocene and reduced risks of extinction due to frequent dispersal possibly via East China Sea Land Bridge impacted the anomalous species richness between EAS and ENA. Expand
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 160 REFERENCES
Biogeographical diversification of mainland Asian Dendrobium (Orchidaceae) and its implications for the historical dynamics of evergreen broad-leaved forests
TLDR
The results indicate that Asian Dendrobium was present on mainland Asia since the Oligocene, after which this genus diversified in this region and dispersed into higher elevations, and suggest that the EBLFs of mainland Asia expanded into higher Elevations prior to the late Cenozoic. Expand
Phylogeography of Quercus glauca (Fagaceae), a dominant tree of East Asian subtropical evergreen forests, based on three chloroplast DNA interspace sequences
TLDR
Haplotype spatial distribution, ENM, mismatch distribution, and neutrality tests suggest that Q. glauca in Southeast China experiences expansion, and the current distribution in region III might be shaped by southward expansion from regions I and II after last glacial maximum (LGM). Expand
Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae).
TLDR
The biogeographic hypothesis that all major oak lineages evolved locally at middle latitudes within the general distribution of their fossil ancestors was fully supported and a New World origin for the widespread white oaks of the Northern Hemisphere was suggested. Expand
Molecular phylogeography and ecological niche modelling of a widespread herbaceous climber, Tetrastigma hemsleyanum (Vitaceae): insights into Plio-Pleistocene range dynamics of evergreen forest in subtropical China.
TLDR
The findings suggest relative demographic stability of this biome in China over the last glacial-interglacial cycle, in contrast with palaeobiome reconstructions showing that this forest biome retreated to areas of today's tropical South China during the LGM. Expand
Evolutionary history of subtropical evergreen broad-leaved forest in Yunnan Plateau and adjacent areas: an insight from Quercus schottkyana (Fagaceae)
TLDR
This study integrated multilocus phylogeography, species distribution models, and regression analysis to investigate the effects of paleoenvironmental changes on the contemporary genetic patterns of Quercus schottkyana, an endemic and dominant evergreen oak in the YPA, and provides new insights into the understanding of the evolutionary history of SEBF in YPA. Expand
Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach
TLDR
A fossil‐calibrated phylogeny of Virentes was generated using RADseq data to estimate divergence times and used nuclear microsatellites, chloroplast sequences and an intron region of nitrate reductase to examine genetic diversity within species, rates of gene flow among species and ancestral population size of disjunct sister species. Expand
Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in western North America.
TLDR
It is concluded that the genomic consequences of introgression caused the attraction of distant lineages in phylogenetic tree space, and that introgressive and divergent signals can be disentangled to produce a robust estimate of the phylogenetic history of the species. Expand
Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity.
TLDR
A highly resolved phylogeny demonstrates sympatric parallel diversification in climatic niche, leaf habit, and diversification rates in the oaks, which has shaped the diversity of North American forests. Expand
Phylogeographic analysis and environmental niche modeling of widespread shrub Rhododendron simsii in China reveals multiple glacial refugia during the last glacial maximum
TLDR
Both mismatch distribution analysis and environmental niche modeling indicated that multiple glacial refugia were maintained across the range of Rhododendron simsii during the last glacial maximum, contrary to the previous hypothesis that subtropical broad leaved evergreen forests were forced to retreat southward as far as 25° N. Expand
Chloroplast diversity and population differentiation of Castanopsis fargesii (Fagaceae): a dominant tree species in evergreen broad-leaved forest of subtropical China
TLDR
Subtropical forests in China constitute the major expanse of evergreen broad-leaved forest in East Asia and contraction-expansion process was detected in the west, center, and east regions, indicating that geomorphological remodeling together with climatic changes in the Pleistocene had strong impact on genetic structure of C. fargesii. Expand
...
1
2
3
4
5
...