Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes.

  title={Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes.},
  author={Michelle M. McMahon and Michael J. Sanderson},
  journal={Systematic biology},
  volume={55 5},
A comprehensive phylogeny of papilionoid legumes was inferred from sequences of 2228 taxa in GenBank release 147. A semiautomated analysis pipeline was constructed to download, parse, assemble, align, combine, and build trees from a pool of 11,881 sequences. Initial steps included all-against-all BLAST similarity searches coupled with assembly, using a novel strategy for building length-homogeneous primary sequence clusters. This was followed by a combination of global and local alignment… CONTINUE READING
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