Phylogenetic reconstruction of the felidae using 16S rRNA and NADH-5 mitochondrial genes

@article{Johnson2009PhylogeneticRO,
  title={Phylogenetic reconstruction of the felidae using 16S rRNA and NADH-5 mitochondrial genes},
  author={Warren E. Johnson and Stephen J. O’Brien},
  journal={Journal of Molecular Evolution},
  year={2009},
  volume={44},
  pages={S98-S116}
}
The Felidae family represents a challenge for molecular phylogenetic reconstruction because it consists of 38 living species that evolved from a relatively recent common ancestor (10–15 million years ago). We have determined mitochondrial DNA sequences from two genes that evolve at relatively rapid evolutionary rates, 16S rRNA (379 bp) and NADH dehydrogenase subunit 5 (NADH-5, 318 bp), from multiple individuals of 35 species. Based on separate and combined gene analyses using minimum evolution… 
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References

SHOWING 1-10 OF 81 REFERENCES
Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae: ocelot and domestic cat lineages.
TLDR
Phylogenetic reconstruction supports more recent, intralineage associations but fails to completely resolve interlineage relationships, and implications of the relative recency of felid evolution, presence of ancestral polymorphisms, and influence of outgroups in placement of the topological root are discussed.
Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae.
TLDR
DNA sequence comparisons of two mitochondrial DNA genes were used to infer phylogenetic relationships among 17 Felidae species, notably 15 in the previously described pantherine lineage, and suggested the recognition of a recently evolved monophyletic genus Panthera.
A MOLECULAR PHYLOGENY OF THE FELIDAE: IMMUNOLOGICAL DISTANCE
TLDR
The phylogenetic distances between 34 of the 37 extant species of Felidae were estimated using albumin immunological distances (AID) and the derived topology is highly consistent with the karyological disposition of these species, as well as with the fossil record of this family.
Tracking the evolution of the elusive Andean mountain cat (Oreailurus jacobita) from mitochondrial DNA.
TLDR
It is suggested that the Andean mountain cat diverged from a common ancestor with the ocelot (Leopardus paradalis) and margay and exhibits moderate levels of genetic variation.
Phylogenetic reconstruction of South American felids defined by protein electrophoresis
TLDR
The results suggest that modern South American felids are monophyletic and evolved rapidly after the formation of the Panama land bridge between North and South America.
Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals.
TLDR
An empirical "selective retardation index" is computed to quantify the sum of all constraints, selective and otherwise, that limit sequence divergence of mitochondrial gene sequences over time.
Resolution of recent radiations within three evolutionary lineages of felidae using mitochondrial restriction fragment length polymorphism variation
Patterns of mitochondrial restriction fragment length polymorphism (RFLP) variation were used to resolve more recent relationships among the species of the Felidae ocelot lineage, domestic cat
DNA hybridization evidence of hominoid phylogeny: Results from an expanded data set
TLDR
An expanded data set totaling 514 DNA hybrids supports the branching order given above for the phylogeny of the hominoids, and the possible effects of differences in age at first breeding are discussed.
A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)
TLDR
High levels of character congruence were observed among 89 biochemical and morphological synapomorphies scored on 10 species of Epicrates, and the consensus cladogram was consistent with the phylogenetic interpretation attached to the resulting hypothesis, which is a consensus of two equally parsimonious cladograms.
Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome.
TLDR
Phylogenetic analysis of mitochondrial gene sequences confirms the recent transfer of the cytoplasmic mtDNA sequences to the domestic cat nucleus and recapitulates evolutionary relationships between mammal species.
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3
4
5
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