Phylogenetic reassessment of Hyaloscyphaceae sensu lato (Helotiales, Leotiomycetes) based on multigene analyses.

@article{Han2014PhylogeneticRO,
  title={Phylogenetic reassessment of Hyaloscyphaceae sensu lato (Helotiales, Leotiomycetes) based on multigene analyses.},
  author={Jae-Gu Han and Tsuyoshi Hosoya and Gi-Ho Sung and Hyeon-Dong Shin},
  journal={Fungal biology},
  year={2014},
  volume={118 2},
  pages={
          150-67
        }
}
Hyaloscyphaceae is the largest family in Helotiales, Leotiomycetes. It is mainly characterized by minute apothecia with well-differentiated hairs, but its taxonomic delimitation and infrafamilial classification remain ambiguous. This study performed molecular phylogenetic analyses using multiple genes including the ITS-5.8S rDNA, the D1-D2 region of large subunit of rDNA, RNA polymerase II subunit 2, and the mitochondrial small subunit. The primary objective was to evaluate the phylogenetic… 
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References

SHOWING 1-10 OF 80 REFERENCES
PHYLOGENETIC RELATIONSHIPS IN THE FAMILY HYALOSCYPHACEAE INFERRED FROM SEQUENCES OF ITS REGIONS, 5.8S RIBOSOMAL DNA AND MORPHOLOGICAL CHARACTERS
TLDR
Results obtained from the distance and parsimony analyses of molecular characters suggest that Hyaloscyphaceae is probably monophyletic and that it should be divided into three subfamilies, Arachnopezizoideae, HyalosCyphoideae and Lachno- ideae.
Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny.
TLDR
The results suggest that the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited.
Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory.
TLDR
The various phylogenetic analyses carried out on the data sets allowed us to conclude that: the inclusion of phylogenetic signal from ambiguously aligned regions into the maximum parsimony analyses proved advantageous in reconstructing phylogeny; however, when more data become available, Bayesian analysis using different models of evolution is likely to be more efficient.
Evolutionary relationships of Hyphodiscus hymeniophilus (anamorph Catenulifera rhodogena) inferred from β-tubulin and nuclear ribosomal DNA sequences
TLDR
The phylogenetic position of Catenulifera within the Ascomycota was investigated based on the analysis of the small-subunit (SSU) rDNA sequences and the hypothesis that Cadophora and CatenULifera are congeneric was tested.
TAXONOMY AND NOMENCLATURE IN THE GENUS CALYCELLINA (HYALOSCYPHACEAE)
The genus Calycellina is re-described and discussed; a key to the species is presented. A new combination, Calycellina punctata, with Peziza puberula as a synonym, resolves the taxonomic and
A reassessment of Belonidium Mont. & Dur
TLDR
The species previously referred to Belonidium by De Notaris and later authors are reviewed and suggestions are made as to their taxonomic positions and status with incidental notes on such genera as Belonopsis (Sacc.) Rehm, Calycellina Hohn.
Molecular phylogenetic assessment of the genus Hyphodiscus with description of Hyphodiscus hyaloscyphoides sp. nov.
TLDR
The monophyly of Hyphodiscus was strongly supported in molecular phylogenetic analyses using the D1–D2 region of large subunit of nuclear rDNA, but the phylogenetic relationships with other members of Hyaloscyphaceae were not strongly supported.
Molecular phylogenetic studies of Lachnum and its allies based on the Japanese material
TLDR
The molecular phylogenies strongly supported a group of species with granulate hairs, and it is suggested the concept of Lachnaceae should be restricted to these species.
Phylogeny of Pezicula, Dermea and Neofabraea inferred from partial sequences of the nuclear ribosomal RNA gene cluster.
TLDR
Parsimony analysis confirmed the morphology-based hypothesis that Ocellaria ocellata should be considered as a true Pezicula species and found the position of two taxa was found to be outside the PeZicula main cluster.
A monograph of Hyaloscypha and allied genera
The genera Hyaloscypha Boud., Phialina Hfihnel and HamatocanJhoscypha Svr. are monographed on a world basis. Hyaloscypha, with 27 recognized taxa, is circumscribed to contain whitish and mostly
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