Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.

@article{Xu2007PhylogeneticAO,
  title={Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.},
  author={Jian-Hong Xu and Chaoyang Cheng and Suguru Tsuchimoto and Hisako Ohtsubo and Eiichi Ohtsubo},
  journal={Genes & genetic systems},
  year={2007},
  volume={82 3},
  pages={217-29}
}
Oryza rufipogon, the progenitor of the cultivated rice species Oryza sativa, is known by its wide intraspecific variation. In this study, we performed phylogenetic analyses of O. rufipogon strains and their relationships to O. sativa strains by using 26 newly identified p-SINE1 members from O. rufipogon strains, in addition to 23 members previously identified from O. sativa strains. A total of 103 strains of O. rufipogon and O. sativa were examined for the presence and absence of each of the p… CONTINUE READING

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