PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood

  title={PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood},
  author={Tim Hulsen and P. Groenen and J. D. Vlieg and W. Alkema},
  journal={Nucleic Acids Research},
  pages={D731 - D737}
  • Tim Hulsen, P. Groenen, +1 author W. Alkema
  • Published 2009
  • Biology, Computer Science, Medicine
  • Nucleic Acids Research
  • Phylogenetic patterns show the presence or absence of certain genes in a set of full genomes derived from different species. They can also be used to determine sets of genes that occur only in certain evolutionary branches. Previously, we presented a database named PhyloPat which allows the complete Ensembl gene database to be queried using phylogenetic patterns. Here, we describe an updated version of PhyloPat which can be queried by an improved web server. We used a single linkage clustering… CONTINUE READING
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