PhaseTank: genome-wide computational identification of phasiRNAs and their regulatory cascades

@article{Guo2015PhaseTankGC,
  title={PhaseTank: genome-wide computational identification of phasiRNAs and their regulatory cascades},
  author={Qingli Guo and Xiongfei Qu and Weibo Jin},
  journal={Bioinformatics},
  year={2015},
  volume={31 2},
  pages={284-6}
}
UNLABELLED Emerging evidence has revealed phased siRNAs (phasiRNAs) as important endogenous regulators in plants. However, the integrated prediction tools for phasiRNAs are still limited. In this article, we introduce a stand-alone package PhaseTank for systematically characterizing phasiRNAs and their regulatory networks. (i) It can identify phasiRNAs/tasiRNAs functional cascades (miRNA/phasiRNA → PHAS loci → phasiRNA → target) with high sensitivity and specificity. (ii) By one command… CONTINUE READING

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