PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order

@article{Caraux2005PermutMatrixAG,
  title={PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order},
  author={Gilles Caraux and Sylvie Pinloche},
  journal={Bioinformatics},
  year={2005},
  volume={21 7},
  pages={1280-1}
}
PermutMatrix is a work space designed to graphically explore gene expression data. It relies on the graphical approach introduced by Eisen and also offers several methods for the optimal reorganization of rows and columns of a numerical dataset. For example, several methods are proposed for optimal reorganization of the leaves of a hierarchical clustering tree, along with several seriation or unidimensional scaling methods that do not require any preliminary hierarchical clustering. This… CONTINUE READING
Highly Influential
This paper has highly influenced 43 other papers. REVIEW HIGHLY INFLUENTIAL CITATIONS

Citations

Publications citing this paper.
Showing 1-10 of 254 extracted citations

References

Publications referenced by this paper.
Showing 1-7 of 7 references

Unidimensional scaling and combinatorial optimization

  • L. J. Hubert, P. Arabie
  • 1986
1 Excerpt

Ordered binary trees constructed through an application of Kendall ’ s tau

  • R. Degerman
  • Psychometrika
  • 1982
1 Excerpt

Advances in archaeological seriation

  • S. Kotz, N. L. Johnson
  • Encyclo - pedia of Stastistical Sciences
  • 1978

Two additions to hierarchical cluster analysis

  • G. Gruvaeus, H. Wainer
  • Br. J. Math. Stat. Psychol.,
  • 1972
2 Excerpts

Rapid seriation methods with archaeological application

  • A. E. Gelfand
  • 1971

Similar Papers

Loading similar papers…