Pathline: A Tool For Comparative Functional Genomics

@article{Meyer2010PathlineAT,
  title={Pathline: A Tool For Comparative Functional Genomics},
  author={Miriah D. Meyer and Bang Wong and Mark P. Styczynski and Tamara Munzner and Hanspeter Pfister},
  journal={Comput. Graph. Forum},
  year={2010},
  volume={29},
  pages={1043-1052}
}
Biologists pioneering the new field of comparative functional genomics attempt to infer the mechanisms of gene regulation by looking for similarities and differences of gene activity over time across multiple species. They use three kinds of data: functional data such as gene activity measurements, pathway data that represent a series of reactions within a cellular process, and phylogenetic relationship data that describe the relatedness of species. No existing visualization tool can visually… CONTINUE READING

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References

Publications referenced by this paper.
Showing 1-10 of 27 references

Genomica, http:// genomica.weizmann.ac.il

Y. LUBLING, E. SEGAL
2010

Configuring Hierarchical Layouts to Address Research Questions

IEEE Transactions on Visualization and Computer Graphics • 2009

MizBee: A Multiscale Synteny Browser

IEEE Transactions on Visualization and Computer Graphics • 2009

The history of the cluster heat map

L. WILKINSON, M. FRIENDLY
The American Statistician 63, • 2009

Visualizing Temporal Dynamics at the Genomic and Metabolic Level

2009 13th International Conference Information Visualisation • 2009

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