PROMO: detection of known transcription regulatory elements using species-tailored searches

@article{Messeguer2002PROMODO,
  title={PROMO: detection of known transcription regulatory elements using species-tailored searches},
  author={Xavier Messeguer and Ruth Escudero and Dom{\`e}nec Farr{\'e} and Oscar N{\'u}{\~n}ez and Javier Mart{\'i}nez and M. Mar Alb{\`a}},
  journal={Bioinformatics},
  year={2002},
  volume={18 2},
  pages={333-4}
}
We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences. 
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