PIQA: pipeline for Illumina G1 genome analyzer data quality assessment

  title={PIQA: pipeline for Illumina G1 genome analyzer data quality assessment},
  author={Antonio Mart{\'i}nez-Alc{\'a}ntara and Efren Ballesteros and Chen Feng and Mark Rojas and H. Koshinsky and Viacheslav Fofanov and Paul Havlak and Yuriy Fofanov},
SUMMARY PIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). A short statistical summary, as well as tile-by-tile and cycle-by-cycle graphical representation of clusters density, quality scores and nucleotide frequencies allow easy identification of various technical problems including defective tiles, mistakes in sample/library preparations and abnormalities in the frequencies of appearance of… CONTINUE READING

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