PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.

  title={PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.},
  author={Shivashankar H. Nagaraj and Nicola Waddell and Anil K Madugundu and Scott Wood and Alun Jones and Ramya A. Mandyam and Katia Nones and John V. Pearson and Sean M. Grimmond},
  journal={Journal of proteome research},
  volume={14 5},
We describe PGTools, an open source software suite for analysis and visualization of proteogenomic data. PGTools comprises applications, libraries, customized databases, and visualization tools for analysis of mass-spectrometry data using combined proteomic and genomic backgrounds. A single command is sufficient to search databases, calculate false discovery rates, group and annotate proteins, generate peptide databases from RNA-Seq transcripts, identify altered proteins associated with cancer… CONTINUE READING
Related Discussions
This paper has been referenced on Twitter 13 times. VIEW TWEETS

From This Paper

Figures, tables, and topics from this paper.


Publications citing this paper.
Showing 1-10 of 16 extracted citations


Publications referenced by this paper.
Showing 1-10 of 52 references

Similar Papers

Loading similar papers…