PATMAT: a searching and extraction program for sequence, pattern and block queries and databases

@article{Wallace1992PATMATAS,
  title={PATMAT: a searching and extraction program for sequence, pattern and block queries and databases},
  author={J. C. Wallace and Steven Henikoff},
  journal={Computer applications in the biosciences : CABIOS},
  year={1992},
  volume={8 3},
  pages={
          249-54
        }
}
A program has been developed that provides molecular biologists with multiple tools for searching databases, yet uses a very simple interface. PATMAT can use protein or (translated) DNA sequences, patterns or blocks of aligned proteins as queries of databases consisting of amino acid or nucleotide sequences, patterns or blocks. The ability to search databases of blocks by 'on-the-fly' conversion to scoring matrices provides a new tool for detection and evaluation of distant relationships… CONTINUE READING

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