• Corpus ID: 221136090

PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly

@article{Angizi2020PANDAPA,
  title={PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly},
  author={Shaahin Angizi and Naima Ahmed Fahmi and W. Zhang and Deliang Fan},
  journal={ArXiv},
  year={2020},
  volume={abs/2008.06177}
}
Spurred by widening gap between data processing speed and data communication speed in Von-Neumann computing architectures, some bioinformatic applications have harnessed the computational power of Processing-in-Memory (PIM) platforms. However, the performance of PIMs unavoidably diminishes when dealing with such complex applications seeking bulk bit-wise comparison or addition operations. In this work, we present an efficient Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly… 

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