PAML: a program package for phylogenetic analysis by maximum likelihood

@article{Yang1997PAMLAP,
  title={PAML: a program package for phylogenetic analysis by maximum likelihood},
  author={Z. Yang},
  journal={Computer applications in the biosciences : CABIOS},
  year={1997},
  volume={13 5},
  pages={
          555-6
        }
}
  • Z. Yang
  • Published 1997
  • Computer Science, Medicine
  • Computer applications in the biosciences : CABIOS
  • PAML, currently in version 1.2, is a package of programs for phylogenetic analyses of DNA and protein sequences using the method of maximum likelihood (ML). The programs can be used for (i) maximum likelihood estimation of evolutionary parameters such as branch lengths in a phylogenetic tree, the transition/transversion rate ratio, the shape parameter of the gamma distribution for variable evolutionary rates at sites, and rate parameters for different genes; (ii) likelihood ratio test of… CONTINUE READING
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