Overcoming sequence misalignments with weighted structural superposition.

Abstract

An appropriate structural superposition identifies similarities and differences between homologous proteins that are not evident from sequence alignments alone. We have coupled our Gaussian-weighted RMSD (wRMSD) tool with a sequence aligner and seed extension (SE) algorithm to create a robust technique for overlaying structures and aligning sequences of… (More)
DOI: 10.1002/prot.24134

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