Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish☆
@article{Kirchberger2014OutgroupEO, title={Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish☆}, author={Paul C Kirchberger and K. M. Sefc and C. Sturmbauer and S. Koblm{\"u}ller}, journal={Molecular Phylogenetics and Evolution}, year={2014}, volume={70}, pages={57 - 62} }
Phylogenetic analyses of rapid radiations are particularly challenging as short basal branches and incomplete lineage sorting complicate phylogenetic inference. Multilocus data of presence-absence polymorphisms such as obtained by AFLP genotyping overcome some of the difficulties, but also present their own intricacies. Here we analyze >1000 AFLP markers to address the evolutionary history of the Limnochromini, a cichlid fish lineage endemic to Lake Tanganyika, and to test for potential effects… CONTINUE READING
Topics from this paper
21 Citations
Mind the Outgroup: Influence of Taxon Sampling on Total-Evidence Dating of Pimpliform Parasitoid Wasps (Hymenoptera, Ichneumonidae)
- Biology, Geography
- 2019
- 1
- PDF
Lake Tanganyika—A 'Melting Pot' of Ancient and Young Cichlid Lineages (Teleostei: Cichlidae)?
- Biology, Medicine
- PloS one
- 2015
- 31
- PDF
Analyzing Reticulate Relationships Using CpDNA and Pyrosequenced ITS1 as Exemplified by Veronica Subgen. Pseudolysimachium (Plantaginaceae)
- Biology
- Systematic Botany
- 2016
- 5
Interspecific hybridization causes long‐term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes
- Biology, Medicine
- Molecular ecology
- 2017
- 37
Inferring ‘weak spots’ in phylogenetic trees: application to mosasauroid nomenclature
- Biology, Medicine
- PeerJ
- 2017
- 11
- PDF
High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment
- Biology, Medicine
- Molecular ecology
- 2015
- 37
- PDF
First insights into the diversity of gill monogeneans of ‘Gnathochromis’ and Limnochromis (Teleostei, Cichlidae) in Burundi: do the parasites mirror host ecology and phylogenetic history?
- Biology, Medicine
- PeerJ
- 2016
- 15
- PDF
Nomenclatural stability does not justify recognition of paraphyletic taxa: A response to Scherz et al. (2016).
- Biology, Medicine
- Molecular phylogenetics and evolution
- 2017
- 8
- PDF
Taxonomist’s Nightmare … Evolutionist’s Delight †: An Integrative Approach Resolves Species Limits in Jumping Bristletails Despite Widespread Hybridization and Parthenogenesis
- Biology, Medicine
- Systematic biology
- 2016
- 23
- PDF
References
SHOWING 1-10 OF 48 REFERENCES
Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers.
- Biology, Medicine
- Systematic biology
- 2010
- 54
- PDF
Nuclear and mitochondrial data reveal different evolutionary processes in the Lake Tanganyika cichlid genus Tropheus
- Medicine, Biology
- BMC Evolutionary Biology
- 2007
- 106
- PDF
Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae)
- Biology, Medicine
- BMC Evolutionary Biology
- 2009
- 67
- PDF
Comparative Phylogenetic Analyses of the Adaptive Radiation of Lake Tanganyika Cichlid Fish: Nuclear Sequences Are Less Homoplasious But Also Less Informative Than Mitochondrial DNA
- Biology, Medicine
- Journal of Molecular Evolution
- 2004
- 50
- PDF
Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini.
- Biology, Medicine
- Molecular phylogenetics and evolution
- 2010
- 116
A multi criterion approach for the selection of optimal outgroups in phylogeny: recovering some support for Mandibulata over Myriochelata using mitogenomics.
- Biology, Medicine
- Molecular phylogenetics and evolution
- 2008
- 92
Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization
- Medicine, Biology
- BMC Evolutionary Biology
- 2006
- 138
Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets.
- Biology, Medicine
- Molecular biology and evolution
- 2010
- 39
- PDF
Evolutionary History of Lake Tanganyika's Predatory Deepwater Cichlids
- Biology, Medicine
- International journal of evolutionary biology
- 2012
- 15
- PDF