OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

  title={OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups},
  author={Feng Chen and Aaron J. Mackey and Christian J. Stoeckert and David S. Roos},
  journal={Nucleic Acids Research},
  pages={D363 - D368}
The OrthoMCL database (http://orthomcl.cbil.upenn.edu) houses ortholog group predictions for 55 species, including 16 bacterial and 4 archaeal genomes representing phylogenetically diverse lineages, and most currently available complete eukaryotic genomes: 24 unikonts (12 animals, 9 fungi, microsporidium, Dictyostelium, Entamoeba), 4 plants/algae and 7 apicomplexan parasites. OrthoMCL software was used to cluster proteins based on sequence similarity, using an all-against-all BLAST search of… CONTINUE READING
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