OntologyTraverser: an R package for GO analysis

@article{Young2005OntologyTraverserAR,
  title={OntologyTraverser: an R package for GO analysis},
  author={Andrew Young and Nathan Whitehouse and J. Cho and Chad A. Shaw},
  journal={Bioinformatics},
  year={2005},
  volume={21 2},
  pages={275-6}
}
UNLABELLED Gene Ontology (GO) annotations have become a major tool for analysis of genome-scale experiments. We have created OntologyTraverser--an R package for GO analysis of gene lists. Our system is a major advance over previous work because (1) the system can be installed as an R package, (2) the system uses Java to instantiate the GO structure and the SJava system to integrate R and Java and (3) the system is also deployed as a publicly available web tool. AVAILABILITY Our software is… CONTINUE READING