• Corpus ID: 115548718

OP-PCPJ140189 1..8

@inproceedings{Ohyanagi2015OPPCPJ1401891,
  title={OP-PCPJ140189 1..8},
  author={Hajime Ohyanagi and Tomoyuki Takano and Shin Terashima and Masaaki Kobayashi and Maasa Kanno and Kyoko Morimoto and Hiromi Kanegae and Yohei Sasaki and Misa Saito and Satomi Asano and Soichi Ozaki and Toru Kudo and Koji Yokoyama and Koichiro Aya and Keita Suwabe and Go Suzuki and Koh Aoki and Yasutaka Kubo and Masao Watanabe and Makoto Matsuoka and Kentaro Yano},
  year={2015}
}
Interspecies Gene Expression Networks with NLP-Based Curation Hajime Ohyanagi, Tomoyuki Takano, Shin Terashima, Masaaki Kobayashi, Maasa Kanno, Kyoko Morimoto, Hiromi Kanegae, Yohei Sasaki, Misa Saito, Satomi Asano, Soichi Ozaki, Toru Kudo, Koji Yokoyama, Koichiro Aya, Keita Suwabe, Go Suzuki, Koh Aoki, Yasutaka Kubo, Masao Watanabe, Makoto Matsuoka and Kentaro Yano* School of Agriculture, Meiji University, Kawasaki, 214-8571 Japan CREST, JST, Saitama, 332-0012 Japan Tsukuba Division… 

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References

SHOWING 1-10 OF 41 REFERENCES
Plant and cell physiology 2014 online database issue.
TLDR
This year’s collection of Database articles promises to provide useful omics data to plant researchers, and comprise descriptions of nine sophisticated web databases.
OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice
TLDR
A new method for GEN construction is developed which takes minimal time even for large-scale expression data with general computational circumstances and requires no prior parameters to remove sample redundancies in the data set.
LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
TLDR
The results show that the LcSAIN1 gene might play an important positive modulation role in increasing the expression of transcription factors and functional genes in transgenic plants under salt stress and that it augments stress tolerance through the accumulation of compatible solutes and the alleviation of changes in reactive oxygen species.
ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants
TLDR
An updated version of ATTED-II is described, which expands this resource to include additional agriculturally important plants and includes more gene expression data from microarray and RNA sequencing studies.
The map-based sequence of the rice genome
TLDR
A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Data, information, knowledge and principle: back to metabolism in KEGG
TLDR
The reaction modules, which represent chemical units of reactions, have been used to analyze design principles of metabolic networks and also to improve the definition of K numbers and associated annotations for translational bioinformatics.
RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome
TLDR
The updated version of RiceXPro can be used more efficiently to survey the gene expression signature of rice in sufficient depth and may also provide clues on gene function of other cereal crops.
Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).
TLDR
The identification of single nucleotide polymorphisms (SNPs) and insertion/deletions (indels) between 'Micro-Tom' and 'Heinz 1706' is reported and represents a valuable contribution to the ' Micro-Tom'-based genomics resources.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
TLDR
A new transcriptome component has been added to store RNA-seq and microarray data and the database architecture combines SGN-specific schemas and the community-developed Chado schema for compatibility with other genome databases.
The genome of melon (Cucumis melo L.)
TLDR
The data suggest that transposon amplification may in part explain the increased size of the melon genome compared with the close relative cucumber, and a low number of nucleotide-binding site–leucine-rich repeat disease resistance genes were annotated, suggesting the existence of specific defense mechanisms in this species.
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