Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution.

@article{Rice1985NucleotideSO,
  title={Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution.},
  author={Charles M. Rice and Edith M. Lenches and S R Eddy and S J Shin and Rebecca L. Sheets and James H. Strauss},
  journal={Science},
  year={1985},
  volume={229 4715},
  pages={
          726-33
        }
}
The sequence of the entire RNA genome of the type flavivirus, yellow fever virus, has been obtained. Inspection of this sequence reveals a single long open reading frame of 10,233 nucleotides, which could encode a polypeptide of 3411 amino acids. The structural proteins are found within the amino-terminal 780 residues of this polyprotein; the remainder of the open reading frame consists of nonstructural viral polypeptides. This genome organization implies that mature viral proteins are produced… 
High genetic stability of the region coding for the structural proteins of yellow fever virus strain 17D.
TLDR
The genome of the Pasteur 17D-204 vaccine strain of yellow fever virus has been cloned into pBR327 and the sequence of the 5' region which codes for the C, M and E structural proteins and the NS1 non-structural protein is sequenced, indicating a remarkable stability of these two vaccine substrains.
Fine Mapping of a cis-Acting Sequence Element in Yellow Fever Virus RNA That Is Required for RNA Replication and Cyclization
TLDR
This region is larger than the core sequence of 8 nucleotides conserved among all mosquito-borne flaviviruses and contains instead the entire sequence previously proposed to be involved in cyclization of yellow fever virus RNA.
Complete nucleotide sequence and genetic organization of grapevine fanleaf nepovirus RNA 1
TLDR
The location of genome-linked protein and comparison of the primary structure of the 253K polyprotein to that of other closely related viral proteins of the picornavirus-like family allows the proposal of a scheme for the genetic organization of GFLV-FI3 RNAI.
The nucleotide sequence of parsnip yellow fleck virus: a plant picorna-like virus.
TLDR
Comparison of the polyprotein sequence of PYFV with other viral polyprotein sequences reveals similarities to the putative NTP-binding and RNA polymerase domains of cowpea mosaic comovirus, tomato black ring nepovirus and several animal picornaviruses.
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 73 REFERENCES
Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.
TLDR
A conserved fourteen-residue segment consisting of an Asp-Asp sequence flanked by hydrophobic residues has been found in retroviral reverse transcriptases, suggesting this span as a possible active site or nucleic acid recognition region for the polymerases.
In vivo aminoacylation of brome mosaic and barley stripe mosaic virus RNAs
TLDR
It is reported here that single-stranded RNAs of both viruses are aminoacylated in vivo, but that the encapsidatedRNAs of BMV are not.
Restricted translation of the genome of the flavivirus Kunjin in vitro.
TLDR
Virion RNA of Kunjin virus was translated in rabbit reticulocyte lysates at a rate approaching that observed previously in vivo, and no evidence was obtained of translation of the non-structural proteins, despite attempts to retain or perturb the structure of the virion RNA.
Replication strategies of the single stranded RNA viruses of eukaryotes.
TLDR
This chapter will be concerned with the single-stranded RNA viruses which replicate via RNA intermediates and will focus on the animal viruses, but selected plant viruses whose replication strategies are known will also be discussed.
...
1
2
3
4
5
...