Nonlinear methods in the analysis of protein sequences: a case study in rubredoxins.

  title={Nonlinear methods in the analysis of protein sequences: a case study in rubredoxins.},
  author={Alessandro Giuliani and Romualdo Benigni and Paolo Sirabella and Joseph P. Zbilut and Alfredo Colosimo},
  journal={Biophysical journal},
  volume={78 1},
Two computational methods widely used in time series analysis were applied to protein sequences, and their ability to derive structural information not directly accessible through classical sequence comparisons methods was assessed. The primary structures of 19 rubredoxins of both mesophilic and thermophilic bacteria, coded with hydrophobicity values of amino acid residues, were considered as time series and were analyzed by 1) recurrence quantification analysis and 2) spectral analysis of the… CONTINUE READING


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