New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny

@article{Froelicher2011NewUM,
  title={New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny},
  author={Yann Froelicher and Wafa Mouhaya and Jean Baptiste Bassene and Gilles Costantino and Mourad Kamiri and François Luro and Rapha{\"e}l Morillon and Patrick Ollitrault},
  journal={Tree Genetics \& Genomes},
  year={2011},
  volume={7},
  pages={49-61}
}
The aim of this work was to provide a set of mitochondrial markers to reveal polymorphism and to study the maternal phylogeny in citrus. [] Key Method We first used 44 universal markers previously described in the literature: nine of these markers produced amplification products but only one revealed polymorphism in citrus.
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106 Citations
Highly Influential Citations
5
Background Citations
38
Methods Citations
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Results Citations
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106 Citations

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References

SHOWING 1-10 OF 60 REFERENCES

A set of primers for analyzing chloroplast DNA diversity in Citrus and related genera.

The genetic relationships suggested by the unweighted pair group method based on arithmetic means (UPGMA) dendrogram were congruent with previous taxonomic investigations and revealed that all samples fell into seven major clusters, i.e., Citrus medica L., Poncirus, Fortunella,C.

Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs)

The hypothesis that there are only a few naturally occurring species of Citrus and most other types of Citrim arose through various hybridization events between these naturally occurring forms is supported.

Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis

Relationships among 88 accessions representing 45 Citrus species, three man-made hybrids, and six related genera were examined for restriction fragment length polymorphisms (RFLP) and random amplified polymorphic DNA (RAPD) analysis showed that several accessions were probably assigned to the wrong species.

Phylogenetic relationships in the “true citrus fruit trees” revealed by PCR-RFLP analysis of cpDNA

A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA

24 new pairs of plant mitochondrial DNA primers that allow amplification of either introns, intergenic regions or genes are designed and tested along with 11 previously described mitochondrial primer pairs on 28 plant species representing 19 families of higher plants.

A set of universal primers for amplification of polymorphic non‐coding regions of mitochondrial and chloroplast DNA in plants

The genetic information present in the plant mitochondrial DNA (mtDNA) and chloroplast DNA (cpDNA) is of great interest in phylogeny and in population genetics, largely because of the non-mendelian…

Identification and evaluation of chloroplast uni-and trinucleotide sequence repeats in citrus

Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping

Five new EST-SSR markers were produced and were available for citrus genetic studies, and dinucleotide microsatellite markers were more polymorphic than trinucleotide ones, probably related to their distribution that was more often located in the 5' UnTranslated Region (UTR).

LEAF ISOZYMES AS GENETIC MARKERS IN CITRUS

The genetic control of isozymes from Citrus and its near relatives was determined for three gene/ enzyme systems: glutamate oxaloacetate transaminase, phosphoglucose isomerase and phosphoglucose…

Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin

This study represents one of the first successful uses of a mtDNA gene in resolving inter- and intraspecific taxonomic relationships in Angiosperms and yields several important insights into the origins of domesticated Cucurbita.
...