New challenges for text mining: mapping between text and manually curated pathways

@article{Oda2008NewCF,
  title={New challenges for text mining: mapping between text and manually curated pathways},
  author={Kanae Oda and Jin-Dong Kim and Tomoko Ohta and Daisuke Okanohara and Takuya Matsuzaki and Yuka Tateisi and Jun'ichi Tsujii},
  journal={BMC Bioinformatics},
  year={2008},
  volume={9},
  pages={S5 - S5}
}
Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the identification of the mapping position of a specific entity or reaction in a given pathway, (2) the recognition of the causal relationships among multiple reactions, and (3) the formulation and implementation of required inferences based on biological domain knowledge. To address these challenges, we constructed new resources to link the text with a… CONTINUE READING
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