NcRNA homology search using Hamming distance seeds

@inproceedings{Aljawad2011NcRNAHS,
  title={NcRNA homology search using Hamming distance seeds},
  author={Osama Aljawad and Yanni Sun and Alex Liu and Jikai Lei},
  booktitle={BCB},
  year={2011}
}
NcRNAs play important roles in many biological processes. Existing genome-scale ncRNA homology search tools identify ncRNAs in local sequence alignments generated by conventional sequence comparison methods. However, some types of ncRNA lack strong sequence conservation and tend to be missed by conventional sequence comparison methods. In this paper, we propose an ncRNA identification framework that is complementary to existing sequence comparison tools. By integrating a filtration step based… CONTINUE READING
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