NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures

@article{Bansal1995NUPARMAN,
  title={NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures},
  author={Manju Bansal and Dhananjay Bhattacharyya and B. Ravi},
  journal={Computer applications in the biosciences : CABIOS},
  year={1995},
  volume={11 3},
  pages={281-7}
}
Software packages NUPARM and NUCGEN, are described, which can be used to understand sequence directed structural variations in nucleic acids, by analysis and generation of non-uniform structures. A set of local inter basepair parameters (viz. tilt, roll, twist, shift, slide and rise) have been defined, which use geometry and coordinates of two successive basepairs only and can be used to generate polymeric structures with varying geometries for each of the 16 possible dinucleotide steps. Intra… CONTINUE READING

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