NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education
@article{Dinsdale2015NIBLSEAN, title={NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education}, author={Elizabeth A. Dinsdale and Sarah C. R. Elgin and Neal F. Grandgenett and William R Morgan and Anne G. Rosenwald and William E Tapprich and Eric W. Triplett and Mark A. Pauley}, journal={CBE Life Sciences Education}, year={2015}, volume={14} }
To the Editor:
Recent advances in high-throughput experimental methods and related computational technologies have provided life scientists with large and complex data sets. These data sets present exciting new opportunities for advancing research into the fundamental processes of living systems. However, this flood of data also presents many challenges, not the least of which is training students to examine and evaluate such data. Despite the increasing importance of bioinformatics and the…
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References
SHOWING 1-10 OF 46 REFERENCES
A curriculum for bioinformatics: the time is ripe
- EducationBioinform.
- 1998
The problem of defining curriculum is approached with a bias that bioinformatics is not simply a proper subset of biology orComputer science, but has a growing and independent base of scientific tenets that requires specific training not appropriate for either biology or computer science alone.
Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies
- BiologyPLoS Comput. Biol.
- 2014
The Curriculum Task Force of the International Society for Computational Biology Education Committee seeks to define curricular guidelines for those who train and educate bioinformaticians, and details a subsequent effort, wherein the task force broadened its perspectives by examining bioinformatics career opportunities, surveying directors of bio informatics core facilities, and reviewing bioin formatics education programs.
Design and implementation of an interdepartmental bioinformatics program across life science curricula
- BiologyBiochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
- 2007
Using elements of the backward curricular design process, nine faculty members from the Biology, Microbiology, and Chemistry Departments at the University of Wisconsin – La Crosse incorporated bioinformatics in a coordinated manner into 10 courses.
Assessment of a bioinformatics across life science curricula initiative
- EducationBiochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
- 2007
Assessment data show increases in student performance on bioinformatics‐related problems and more confidence in solving such problems with increased exposure to the field of bioinformics.
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era
- BiologyBMC Genomics
- 2013
A cross-disciplinary course that provides undergraduate students with practical experience in running a next generation sequencing instrument through to the analysis and annotation of the generated DNA sequences, and a perceived increase in students’ ability to conduct independent scientific research was measured.
Broader incorporation of bioinformatics in education: opportunities and challenges
- EducationBriefings Bioinform.
- 2010
Broader incorporation of bioinformatics at all education levels requires overcoming the challenges to using transformative computer-requiring learning activities, assisting faculty in collecting assessment data on mastery of student learning outcomes, as well as creating more faculty development opportunities that span diverse skill levels.
Genomic education resources for nursing faculty.
- Medicine, EducationJournal of nursing scholarship : an official publication of Sigma Theta Tau International Honor Society of Nursing
- 2011
This paper sets out to address the following points: why there is a need for quality genomics education resources to support nurse education; what is required from a resource to make it "useful" for the user; and how the quality and impact of a resource can be measured.
Next Steps for Vision and Change: Moving from Setting the Vision to Change
- EducationCBE life sciences education
- 2012
A large part of the biology community, including faculty, students, and administrators, as well as representatives of professional societies and funding agencies, met in Washington, D.C, in 2009 to discuss how to bring biology undergraduate education into the 21st century and the initial results were Vision and Change in Undergraduate Education.
Curriculum and course materials for a forensic DNA biology course
- EducationBiochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
- 2014
The curriculum discussed below is an attempt to synthesize disparate information and although certainly not the only acceptable methodology, the below discussion represents “a way” for synthesizing and aggregating this information into a cohesive, comprehensive whole.
A Survey of Scholarly Literature Describing the Field of Bioinformatics Education and Bioinformatics Educational Research
- EducationCBE life sciences education
- 2014
Current curricular approaches for integrating bioinformatics education, concepts and skills being taught, pedagogical approaches and methods of delivery, and educational research and evaluation results are identified.