MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

@inproceedings{Ronquist2012MrBayes3E,
  title={MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space},
  author={Fredrik Ronquist and Maxim Teslenko and P C P Van der Mark and Daniel L. Ayres and Aaron E. Darling and Sebastian H{\"o}hna and Bret R. Larget and Liang Liu and Marc A. Suchard and John P. Huelsenbeck},
  booktitle={Systematic biology},
  year={2012}
}
Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With this note, we announce the release of version 3.2, a major upgrade to the latest official release presented in 2003. The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly. The introduction of new proposals and automatic optimization… CONTINUE READING
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