MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

@article{Ronquist2012MrBayes3E,
  title={MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space},
  author={Fredrik Ronquist and Maxim Teslenko and Paul van der Mark and Daniel L. Ayres and Aaron E. Darling and Sebastian H{\"o}hna and Bret R. Larget and Liang Fei Liu and Marc A. Suchard and John P. Huelsenbeck},
  journal={Systematic Biology},
  year={2012},
  volume={61},
  pages={539 - 542}
}
  • Fredrik Ronquist, Maxim Teslenko, +7 authors John P. Huelsenbeck
  • Published 2012
  • Computer Science, Medicine, Mathematics
  • Systematic Biology
  • Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. [...] Key Result Speedup factors range from around 2 with SSE code to more than 50 with BEAGLE for codon problems. Checkpointing across all models allows long runs to be completed even when an analysis is prematurely terminated. New models include relaxed clocks, dating, model averaging across time-reversible substitution models, and support for…Expand Abstract

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